To cite medusa, auteur, MECCA, or geiger in a publication use:

medusa

Alfaro, M. E., F. Santini, C. Brock, H. Alamillo, A. Dornburg, D. L. Rabosky, G. Carnevale, and L. J. Harmon (2009) Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. PNAS, 106, 13410-13414.

auteur

Eastman, J. M, M. E. Alfaro, P. Joyce, A. L. Hipp, and L. J. Harmon (2011) A novel comparative method for identifying shifts in the rate of character evolution on trees. Evolution, 65, 3578-3589.

MECCA

Slater, G. J., L. J. Harmon, D. Wegmann, P. Joyce, L. J. Revell, and M. E. Alfaro (2012) Fitting models of continuous trait evolution to incompletely sampled comparative data using approximate Bayesian computation. Evolution, 66, 752-762.

geiger-orig

Harmon, L. J., J. T. Weir, C. D. Brock, R. E. Glor, and W. Challenger (2008) GEIGER: investigating evolutionary radiations. Bioinformatics, 24, 129-131.

geiger

Pennell, M. W., J. M. Eastman, G. J. Slater, J. W. Brown, J. C. Uyeda, R. G. FitzJohn, M. E. Alfaro, and L. J. Harmon {2014} geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees. Bioinformatics, 30, 2216-2218.

Corresponding BibTeX entries:

  @Article{,
    title = {Nine exceptional radiations plus high turnover explain
      species diversity in jawed vertebrates},
    author = {M. E. Alfaro and F. Santini and C. Brock and H. Alamillo
      and A. Dornburg and D. L. Rabosky and G. Carnevale and L. J.
      Harmon},
    journal = {PNAS},
    year = {2009},
    volume = {106},
    pages = {13410-13414},
    doi = {10.1073/pnas.0811087106},
  }

  @Article{,
    title = {A novel comparative method for identifying shifts in the
      rate of character evolution on trees},
    author = {J. M. Eastman and M. E Alfaro and P. Joyce and A. L. Hipp
      and L. J. Harmon},
    journal = {Evolution},
    year = {2011},
    volume = {65},
    pages = {3578-3589},
    doi = {10.1111/j.1558-5646.2011.01401.x},
  }

  @Article{,
    title = {Fitting models of continuous trait evolution to
      incompletely sampled comparative data using approximate Bayesian
      computation},
    author = {G. J. Slater and L. J. Harmon and D. Wegmann and P Joyce
      and L. J. Revell and M. E. Alfaro},
    journal = {Evolution},
    year = {2012},
    volume = {66},
    pages = {752-762},
    doi = {10.1111/j.1558-5646.2011.01474.x},
  }

  @Article{,
    title = {GEIGER: investigating evolutionary radiations},
    author = {L. J. Harmon and J. T. Weir and C. D. Brock and R. E.
      Glor and W. Challenger},
    journal = {Bioinformatics},
    year = {2008},
    volume = {24},
    pages = {129-131},
    doi = {10.1093/bioinformatics/btm538},
  }

  @Article{,
    title = {geiger v2.0: an expanded suite of methods for fitting
      macroevolutionary models to phylogenetic trees},
    author = {M. W. Pennell and J. M. Eastman and G. J. Slater and J.
      W. Brown and J. C. Uyeda and R. G. Fitzjohn and M. E. Alfaro and
      L. J. Harmon},
    journal = {Bioinformatics},
    year = {2014},
    volume = {30},
    pages = {2216-2218},
    doi = {10.1093/bioinformatics/btu181},
  }